Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_4621: Homogentisate 1,2-dioxygenase
is similar to:
PaperBLAST

HGD_PSEPK / Q88E47: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida
Q88E47: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas putida

100% id,
100% cov

HGD_PSEPU / Q6EMI9: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida

97% id,
100% cov

AO353_15550: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

83% id,
100% cov

More...

PP_2518: gallate dioxygenase
is similar to:
PaperBLAST

GALA_PSEPK / Q88JX5: Gallate dioxygenase; Gallate degradation protein A; EC 1.13.11.57 from Pseudomonas putida
gllA / Q88JX5: gallate dioxygenase monomer (EC 1.13.11.57) from Pseudomonas putida

100% id,
100% cov

desB / Q5NTE5: gallate dioxygenase monomer (EC 1.13.11.57) from Sphingomonas paucimobilis
Q5NTE5: gallate dioxygenase (EC 1.13.11.57) from Sphingomonas paucimobilis
G2IKE5: gallate dioxygenase (EC 1.13.11.57) from Sphingobium sp.

59% id,
100% cov

PmdB / Q8RNX9: protocatechuate 4,5-dioxygenase β subunit (EC 1.13.11.8; EC 1.13.11.57) from Comamonas testosteroni

43% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory