Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 7 curated entries in PaperBLAST's database that match '1.13.12.2' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_0383: Lysine 2-monooxygenase
is similar to:
PaperBLAST

Q88QV1: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas putida

100% id,
100% cov

W6JQJ6: lysine 2-monooxygenase (EC 1.13.12.2); L-amino-acid oxidase (EC 1.4.3.2) from Pseudomonas sp.

94% id,
100% cov

AO353_07420: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

90% id,
100% cov

More...

PP_4983: putative amine oxidase
is similar to:
PaperBLAST

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

30% id,
26% cov

PP_5257: L-pipecolate oxidase
is similar to:
PaperBLAST

Pf1N1B4_2505: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

24% id,
28% cov

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

25% id,
25% cov

AO353_07420: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

25% id,
23% cov

PP_4548: putative Oxidoreductase
is similar to:
PaperBLAST

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

29% id,
14% cov

PP_5273: putative Oxidoreductase
is similar to:
PaperBLAST

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

38% id,
9% cov

AO353_07420: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

38% id,
9% cov

Pf1N1B4_2505: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

38% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory