Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1770: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

41% id,
94% cov

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

40% id,
96% cov

O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus

39% id,
93% cov

More...

PP_4188: 2-oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

35% id,
64% cov

PP_4403: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

31% id,
67% cov

PP_1769: chorismate mutase/Prephenate dehydratase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

33% id,
57% cov

PP_0338: AceF-S-acetyldihydrolipoate
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

33% id,
46% cov

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

59% id,
17% cov

PP_5021: Methyl-accepting chemotaxis transducer
is similar to:
PaperBLAST

novF / Q9L9G2: prephenate dehydrogenase (EC 1.3.1.12) from Streptomyces niveus

22% id,
57% cov

PP_4338: Chemotaxis histidine kinase CheA
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

26% id,
48% cov

PP_0553: Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

30% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

406370-408007 (frame -1) on AE015451
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli
Also see hits to annotated proteins above

54% id,
83% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory