Searching in Pseudomonas putida KT2440 (Putida)
Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).
These curated entries have 12 distinct sequences.
Running ublast with E ≤ 0.01
Found 8 relevant proteins in Pseudomonas putida KT2440, or try another query
PP_1770: 3-phosphoshikimate 1-carboxyvinyltransferase is similar to: | PaperBLAST |
J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium | 41% id, 94% cov |
TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis | 40% id, 96% cov |
O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus | 39% id, 93% cov |
PP_4188: 2-oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 35% id, 64% cov |
PP_4403: Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 31% id, 67% cov |
PP_1769: chorismate mutase/Prephenate dehydratase is similar to: | PaperBLAST |
O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus | 33% id, 57% cov |
PP_0338: AceF-S-acetyldihydrolipoate is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 33% id, 46% cov |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 59% id, 17% cov |
PP_5021: Methyl-accepting chemotaxis transducer is similar to: | PaperBLAST |
novF / Q9L9G2: prephenate dehydrogenase (EC 1.3.1.12) from Streptomyces niveus | 22% id, 57% cov |
PP_4338: Chemotaxis histidine kinase CheA is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 26% id, 48% cov |
PP_0553: Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 30% id, 21% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
406370-408007 (frame -1) on AE015451 is similar to: | PaperBLAST |
P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli | 54% id, 83% cov |
Lawrence Berkeley National Laboratory