Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 67 curated entries in PaperBLAST's database that match '1.4.1.2'.

These curated entries have 52 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_2080: NAD-specific glutamate dehydrogenase
is similar to:
PaperBLAST

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

84% id,
100% cov

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

73% id,
100% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

53% id,
100% cov

More...

PP_0675: glutamate dehydrogenase, NADP-dependent
is similar to:
PaperBLAST

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

57% id,
99% cov

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from Clostridium symbiosum

54% id,
100% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

33% id,
99% cov

More...

PP_5193: glycine cleavage system H protein 2
is similar to:
PaperBLAST

gcvH / A0A7H4L2B5: glycine cleavage system H protein (EC 1.4.1.27) from Desulfovibrio sp.

46% id,
95% cov

AT2G35120 / O82179: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

47% id,
81% cov

AT2G35370 / P25855: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

47% id,
77% cov

More...

PP_0989: glycine cleavage system H protein 1
is similar to:
PaperBLAST

gcvH / A0A7H4L2B5: glycine cleavage system H protein (EC 1.4.1.27) from Desulfovibrio sp.

43% id,
90% cov

P11183: H-protein-(lipoyl)lysine (EC 1.4.1.27) from Gallus gallus

43% id,
77% cov

AT2G35120 / O82179: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana

39% id,
80% cov

More...

PP_0986: aminomethyltransferase
is similar to:
PaperBLAST

gcvT / A0A7H4L2B6: glycine cleavage system T protein (EC 1.4.1.27) from Desulfovibrio sp.

39% id,
98% cov

PP_4617: leucine dehydrogenase
is similar to:
PaperBLAST

VDH_STRA4 / O69056: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces albus

42% id,
92% cov

VDH_STRCO / Q06539: Valine dehydrogenase; ValDH; EC 1.4.1.23 from Streptomyces coelicolor
vdh / Q06539: valine dehydrogenase monomer (EC 1.4.1.23) from Streptomyces coelicolor

41% id,
92% cov

DHPH_CALTT / F5L9G2: Phenylalanine dehydrogenase; PheDH; EC 1.4.1.20 from Caldalkalibacillus thermarum

39% id,
92% cov

More...

PP_5366: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

lpdA / A0A7H4L512: glycine cleavage system L protein (EC 1.4.1.27) from Desulfovibrio sp.

36% id,
98% cov

PP_4187: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

lpdA / A0A7H4L512: glycine cleavage system L protein (EC 1.4.1.27) from Desulfovibrio sp.

36% id,
98% cov

PP_5194: aminomethyltransferase
is similar to:
PaperBLAST

gcvT / A0A7H4L2B6: glycine cleavage system T protein (EC 1.4.1.27) from Desulfovibrio sp.

36% id,
97% cov

PP_4404: dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex
is similar to:
PaperBLAST

lpdA / A0A7H4L512: glycine cleavage system L protein (EC 1.4.1.27) from Desulfovibrio sp.

34% id,
98% cov

PP_3819: glutathione reductase (NADPH)
is similar to:
PaperBLAST

lpdA / A0A7H4L512: glycine cleavage system L protein (EC 1.4.1.27) from Desulfovibrio sp.

34% id,
96% cov

PP_2151: soluble pyridine nucleotide transhydrogenase
is similar to:
PaperBLAST

lpdA / A0A7H4L512: glycine cleavage system L protein (EC 1.4.1.27) from Desulfovibrio sp.

29% id,
99% cov

PP_4431: Ornithine cyclodeaminase 1
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

28% id,
96% cov

PP_3533: putative ornithine cyclodeaminase
is similar to:
PaperBLAST

DAUB_PSEAE / Q9HXE4: NAD(P)H-dependent anabolic L-arginine dehydrogenase DauB; EC 1.4.1.25 from Pseudomonas aeruginosa
dauB / Q9HXE4: anabolic L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa
Q9HXE4: L-arginine dehydrogenase (EC 1.4.1.25) from Pseudomonas aeruginosa

26% id,
73% cov

PP_1944: putative Aminomethyltransferase
is similar to:
PaperBLAST

gcvT / A0A7H4L2B6: glycine cleavage system T protein (EC 1.4.1.27) from Desulfovibrio sp.

22% id,
59% cov

PP_2607: conserved exported protein of unknown function
is similar to:
PaperBLAST

lpdA / A0A7H4L512: glycine cleavage system L protein (EC 1.4.1.27) from Desulfovibrio sp.

42% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1129568-1130143 (frame -1) on AE015451
is similar to:
PaperBLAST

P11183: H-protein-(lipoyl)lysine (EC 1.4.1.27) from Gallus gallus
Also see hits to annotated proteins above

41% id,
100% cov

GCSH / P23434: glycine cleavage system H protein, mitochondrial (EC 1.4.1.27) from Homo sapiens
Also see hits to annotated proteins above

38% id,
94% cov

AT2G35370 / P25855: glycine decarboxylase H protein (EC 1.4.1.27) from Arabidopsis thaliana
Also see hits to annotated proteins above

39% id,
92% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory