Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 14 curated entries in PaperBLAST's database that match '1.5.1.34' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_2432: 6,7-dihydropteridine reductase
is similar to:
PaperBLAST

NFSB_ECOLI / P38489: Oxygen-insensitive NAD(P)H nitroreductase; Dihydropteridine reductase; FMN-dependent nitroreductase; EC 1.-.-.-; EC 1.5.1.34 from Escherichia coli
Ntr / b0578: NAD(P)H nitroreductase NfsB (EC 1.5.1.34) from Escherichia coli
nfnB / PDB|1OO5_A: oxygen-insensitive NAD(P)H nitroreductase; EC 1.-.-.-; EC 1.5.1.34 from Escherichia coli
nfsB / P38489: NAD(P)H-dependent nitroreductase NfsB (EC 1.6.5.2; EC 1.5.1.34) from Escherichia coli

52% id,
99% cov

PP_0808: Flavohemoprotein
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

43% id,
100% cov

PP_1163: Oxidoreductase, FAD-binding
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

32% id,
65% cov

PP_3737: vanillate O-demethylase oxidoreductase
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

29% id,
61% cov

PP_0316: putative glycine-betaine dioxygenase subunit
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

27% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory