Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 7 curated entries in PaperBLAST's database that match '1.5.3.7'.

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_5257: L-pipecolate oxidase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

100% id,
100% cov

PP_3146: putative Oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

29% id,
93% cov

PP_5273: putative Oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

30% id,
92% cov

PP_3775: putative sarcosine oxidase
is similar to:
PaperBLAST

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

27% id,
96% cov

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

27% id,
96% cov

PP_4020: putative Oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

29% id,
88% cov

PP_4548: putative Oxidoreductase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

28% id,
87% cov

PP_5370: Oxidoreductase-related protein
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

24% id,
94% cov

PP_0612: FAD-dependent glycine/D-amino acid oxidase
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

20% id,
95% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

20% id,
95% cov

PP_2549: conserved protein of unknown function
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

26% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4303160-4304383 (frame -1) on AE015451
is similar to:
PaperBLAST

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens
Also see hits to annotated proteins above

27% id,
98% cov

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens
Also see hits to annotated proteins above

27% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory