Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 108 curated entries in PaperBLAST's database that match '2.4.2.2'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_5265: Xanthine phosphoribosyltransferase
is similar to:
PaperBLAST

XPT_BACSU / P42085: Xanthine phosphoribosyltransferase; XPRTase; EC 2.4.2.22 from Bacillus subtilis

75% id,
98% cov

XPT_ENTFA / Q831Y0: Xanthine phosphoribosyltransferase; XPRTase; EC 2.4.2.22 from Enterococcus faecalis

57% id,
98% cov

PP_0833: queuine tRNA-ribosyltransferase
is similar to:
PaperBLAST

TGT_ECOLI / P0A847: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Escherichia coli
Tgt: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
tgt / P0A847: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
P0A847: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Escherichia coli

69% id,
99% cov

Q54177: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Shigella flexneri

69% id,
99% cov

tgt / Q183P1: preQ1 tRNA-ribosyltransferase (EC 2.4.2.29) from Clostridioides difficile

55% id,
99% cov

More...

PP_0624: Uncharacterized protein YfiH
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli

56% id,
98% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

35% id,
87% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

31% id,
92% cov

More...

PP_1679: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
is similar to:
PaperBLAST

cobT / A0A0K1TPX5: nicotinate-nucleotide--5-methoxybenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Moorella thermoacetica

43% id,
94% cov

cobT / A0A1D9FP51: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Clostridium formicaceticum

41% id,
96% cov

COBT_SALTY / Q05603: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; NN:DBI PRT; N(1)-alpha-phosphoribosyltransferase; EC 2.4.2.21 from Salmonella typhimurium
cobT / Q05603: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Salmonella typhimurium
Q05603: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Salmonella enterica

40% id,
96% cov

More...

PP_0747: Hypoxanthine-guanine phosphoribosyltransferase
is similar to:
PaperBLAST

HGXR_TRIFO / P51900: Hypoxanthine-guanine-xanthine phosphoribosyltransferase; HGPRT; HGXPRT; HGXPRTase; EC 2.4.2.22; EC 2.4.2.8 from Tritrichomonas foetus

32% id,
95% cov

PP_3254: putative Nucleosidase
is similar to:
PaperBLAST

Q8YBL1: S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28); methylthioadenosine nucleosidase (EC 3.2.2.16) from Brucella melitensis

33% id,
86% cov

PP_1674: 5,6-dimethylbenzimidazole synthase
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii

41% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1868930-1869823 (frame +2) on AE015451
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii
Also see hits to annotated proteins above

38% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory