Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 17 curated entries in PaperBLAST's database that match '2.6.1.5' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3590: D-lysine aminotransferase
is similar to:
PaperBLAST

TYRB_KLEPN / O85746: Tyrosine aminotransferase; TyrAT; Aromatic-amino-acid transaminase; Aspartate aminotransferase; EC 2.6.1.5; EC 2.6.1.57; EC 2.6.1.1 from Klebsiella pneumoniae

71% id,
100% cov

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

71% id,
100% cov

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

43% id,
100% cov

PP_1972: aromatic-amino-acid aminotransferase
is similar to:
PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

51% id,
100% cov

TYRB_KLEPN / O85746: Tyrosine aminotransferase; TyrAT; Aromatic-amino-acid transaminase; Aspartate aminotransferase; EC 2.6.1.5; EC 2.6.1.57; EC 2.6.1.1 from Klebsiella pneumoniae

50% id,
100% cov

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

47% id,
100% cov

PP_4784: Glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

33% id,
87% cov

PP_1872: glutamate-pyruvate aminotransferase
is similar to:
PaperBLAST

ATTY_MOUSE / Q8QZR1: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Mus musculus

29% id,
87% cov

ATTY_RAT / P04694: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Rattus norvegicus

29% id,
87% cov

ATTY_TRYCR / P33447: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Trypanosoma cruzi

28% id,
91% cov

More...

PP_4108: putative 4-aminobutyrate aminotransferase
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

32% id,
73% cov

PP_4481: Succinylornithine transaminase/acetylornithine aminotransferase
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

26% id,
88% cov

PP_3721: Arginine--pyruvate transaminase AruH
is similar to:
PaperBLAST

A0A0A7DQ59: tyrosine transaminase (EC 2.6.1.5) from Scutellaria baicalensis

25% id,
90% cov

A0A0A7DPK0: tyrosine transaminase (EC 2.6.1.5) from Scutellaria baicalensis

25% id,
88% cov

V5M241: tyrosine transaminase (EC 2.6.1.5) from Petunia x

26% id,
84% cov

More...

PP_0372: Acetylornithine aminotransferase 2
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

31% id,
73% cov

PP_0858: putative methionine/glutamine aminotransferase
is similar to:
PaperBLAST

A0A0A7DPK0: tyrosine transaminase (EC 2.6.1.5) from Scutellaria baicalensis

22% id,
94% cov

A0A0A7DQ59: tyrosine transaminase (EC 2.6.1.5) from Scutellaria baicalensis

22% id,
89% cov

TAT_ARATH / Q9LVY1: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Arabidopsis thaliana
Q9LVY1: tyrosine transaminase (EC 2.6.1.5) from Arabidopsis thaliana

22% id,
84% cov

PP_0214: 4-aminobutyrate aminotransferase
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

26% id,
76% cov

PP_5275: putative regulator
is similar to:
PaperBLAST

AMT1_SERL9 / F8P1W6: L-tyrosine:2-oxoglutarate aminotransferase amt1; Atromentin biosynthesis protein amt1; EC 2.6.1.5 from Serpula lacrymans

24% id,
75% cov

ATRD_TAPPA / B7STY2: L-tyrosine:2-oxoglutarate aminotransferase atrD; Atromentin biosynthesis protein D; EC 2.6.1.5 from Tapinella panuoides

27% id,
61% cov

ATTY_HUMAN / P17735: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Homo sapiens

26% id,
50% cov

More...

PP_4197: Transcriptional regulator, GntR family
is similar to:
PaperBLAST

ATTY_CAEEL / Q93703: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Caenorhabditis elegans

23% id,
75% cov

AMT1_SERL9 / F8P1W6: L-tyrosine:2-oxoglutarate aminotransferase amt1; Atromentin biosynthesis protein amt1; EC 2.6.1.5 from Serpula lacrymans

25% id,
67% cov

ATTY_HUMAN / P17735: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Homo sapiens

24% id,
67% cov

More...

PP_5342: Transcriptional regulator, GntR family
is similar to:
PaperBLAST

ATTY_HUMAN / P17735: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Homo sapiens

26% id,
64% cov

ATTY_RAT / P04694: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Rattus norvegicus

26% id,
64% cov

ATTY_MOUSE / Q8QZR1: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Mus musculus

25% id,
64% cov

PP_2799: Aminotransferase, class III
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

24% id,
67% cov

PP_2542: Transcriptional regulator, GntR family
is similar to:
PaperBLAST

ATTY_MOUSE / Q8QZR1: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Mus musculus

23% id,
71% cov

ATTY_RAT / P04694: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Rattus norvegicus

23% id,
70% cov

ATTY_HUMAN / P17735: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Homo sapiens

23% id,
63% cov

More...

PP_3750: Transcriptional regulator, GntR family
is similar to:
PaperBLAST

ATTY_HUMAN / P17735: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Homo sapiens

24% id,
41% cov

PP_2230: putative K(+)/H(+) antiporter subunit A/B
is similar to:
PaperBLAST

ATRD_TAPPA / B7STY2: L-tyrosine:2-oxoglutarate aminotransferase atrD; Atromentin biosynthesis protein D; EC 2.6.1.5 from Tapinella panuoides

30% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5091090-5092406 (frame -3) on AE015451
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus
Also see hits to annotated proteins above

25% id,
95% cov

694136-695500 (frame +2) on AE015451
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus
Also see hits to annotated proteins above

29% id,
73% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory