Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 17 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_0121: homoserine kinase
is similar to:

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC from Pseudomonas aeruginosa

71% id,
100% cov

Ga0059261_3253: homoserine kinase (EC from Sphingomonas koreensis

35% id,
96% cov

PP_5079: Shikimate kinase
is similar to:

thrB / B8DPL9: homoserine kinase (EC from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC: from Desulfovibrio vulgaris

33% id,
79% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory