Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 32 curated entries in PaperBLAST's database that match '2.7.1.71' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_5079: Shikimate kinase is similar to:	PaperBLAST
AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli	51% id, 97% cov
A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii	53% id, 92% cov
AROK_MYCTU / P9WPY3: Shikimate kinase; SK; EC 2.7.1.71 from Mycobacterium tuberculosis P9WPY3: shikimate kinase (EC 2.7.1.71) from Mycobacterium tuberculosis	45% id, 94% cov
CCNA_03103: shikimate kinase (EC 2.7.1.71) from Caulobacter crescentus	43% id, 83% cov
AROL_ECOLI / P0A6E1: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Escherichia coli AroL / b0388: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli aroL / P0A6E1: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli	37% id, 95% cov
AROL_DICCH / P10880: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Dickeya chrysanthemi	35% id, 97% cov
Q6GGG1: shikimate kinase (EC 2.7.1.71) from Staphylococcus aureus	37% id, 80% cov
SK3_ORYSJ / Q7X7H9: Shikimate kinase 3, chloroplastic; OsSK3; EC 2.7.1.71 from Oryza sativa Q7X7H9: shikimate kinase (EC 2.7.1.71) from Oryza sativa	36% id, 55% cov
SK2_ARATH / Q8GY88: Shikimate kinase 2, chloroplastic; AtSK2; EC 2.7.1.71 from Arabidopsis thaliana SK2 / Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana	30% id, 63% cov
SK_SOLLC / Q00497: Shikimate kinase, chloroplastic; EC 2.7.1.71 from Solanum lycopersicum	38% id, 49% cov
SK2_ORYSJ / Q5NTH3: Shikimate kinase 2, chloroplastic; OsSK2; EC 2.7.1.71 from Oryza sativa Q5NTH3: shikimate kinase (EC 2.7.1.71) from Oryza sativa	34% id, 51% cov
SK1_ORYSJ / Q5NTH4: Shikimate kinase 1, chloroplastic; OsSK1; EC 2.7.1.71 from Oryza sativa Q5NTH4: shikimate kinase (EC 2.7.1.71) from Oryza sativa	34% id, 51% cov
SK1_ARATH / Q9SJ05: Shikimate kinase 1, chloroplastic; AtSK1; EC 2.7.1.71 from Arabidopsis thaliana SK1 / Q9SJ05: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana	38% id, 42% cov
More...

PP_1443: DNA-binding, ATP-dependent protease is similar to:	PaperBLAST
SK2_ARATH / Q8GY88: Shikimate kinase 2, chloroplastic; AtSK2; EC 2.7.1.71 from Arabidopsis thaliana SK2 / Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana	31% id, 31% cov
A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii	58% id, 15% cov

PP_5078: 3-dehydroquinate synthase is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans	39% id, 21% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	42% id, 12% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	32% id, 10% cov

PP_2406: putative quinate/shikimate dehydrogenase is similar to:	PaperBLAST
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	28% id, 17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory