Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.8' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1011: glucokinase
is similar to:
PaperBLAST

Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli
glk / P0A6V8: glucokinase (EC 2.7.1.1; EC 2.7.1.8) from Escherichia coli

41% id,
99% cov

PP_4059: fused trehalose synthase B/maltokinase
is similar to:
PaperBLAST

GLCNK_STRJI / A0A1H7TQR5: Glucosamine kinase; GlcN kinase; GlcNK; EC 2.7.1.8 from Streptacidiphilus jiangxiensis
A0A1H7TQR5: glucosamine kinase (EC 2.7.1.8) from Streptacidiphilus jiangxiensis

25% id,
97% cov

GLCNK_MYCS2 / I7FJX8: Glucosamine kinase; GlcN kinase; GlcNK; EC 2.7.1.8 from Mycolicibacterium smegmatis
I7FJX8: glucosamine kinase (EC 2.7.1.8) from Mycolicibacterium smegmatis

27% id,
79% cov

PP_3378: putative 2-ketogluconokinase
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

29% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory