Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 60 curated entries in PaperBLAST's database that match '2.7.2.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_4473: aspartokinase
is similar to:		 PaperBLAST

AK_PSEPK / Q88EI9: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas putida

 100% id,
100% cov

AK_PSEFS / C3JXY0: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas fluorescens

 91% id,
100% cov

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

 90% id,
100% cov

More...

PP_1470: Homoserine dehydrogenase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 40% id,
42% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

 29% id,
30% cov

AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana

 30% id,
27% cov

PP_5227: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 34% id,
45% cov

PP_2077: diaminopimelate decarboxylase
is similar to:		 PaperBLAST

N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

 32% id,
42% cov

PP_1593: Uridylate kinase
is similar to:		 PaperBLAST

O69077: aspartate kinase (EC 2.7.2.4) from Pseudomonas aeruginosa

 27% id,
50% cov

AK_PSEPK / Q88EI9: Aspartate kinase; Aspartokinase; EC 2.7.2.4 from Pseudomonas putida

 26% id,
50% cov

AK_CORFL / P41398: Aspartokinase; Aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens
lysC / GB|AAA23293.1: aspartate kinase; EC 2.7.2.4 from Corynebacterium flavescens

 28% id,
45% cov

More...

PP_0664: homoserine dehydrogenase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 28% id,
42% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

 26% id,
42% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

 30% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1674681-1676132 (frame +3) on AE015451
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima
Also see hits to annotated proteins above

 40% id,
44% cov

772137-773375 (frame +3) on AE015451
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima
Also see hits to annotated proteins above

 28% id,
43% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory