Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 12 curated entries in PaperBLAST's database that match '3.1.1.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1170: Gluconolactonase
is similar to:
PaperBLAST

HSERO_RS05225: L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae

34% id,
100% cov

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

36% id,
91% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

33% id,
100% cov

More...

PP_3180: Smp-30/Cgr1 family protein
is similar to:
PaperBLAST

PS417_11020: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas simiae

32% id,
98% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

32% id,
98% cov

Pf6N2E2_5966: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens

31% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1345188-1346318 (frame -3) on AE015451
is similar to:
PaperBLAST

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.
Also see hits to annotated proteins above

36% id,
97% cov

XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii
Also see hits to annotated proteins above

33% id,
98% cov

Pf1N1B4_413: L-arabinolactonase (EC 3.1.1.15) from Pseudomonas fluorescens
Also see hits to annotated proteins above

32% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory