Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 3 curated entries in PaperBLAST's database that match '3.1.1.68' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3180: Smp-30/Cgr1 family protein
is similar to:
PaperBLAST

Ga0059261_1893: Xylonolactonase (EC 3.1.1.68) from Sphingomonas koreensis

33% id,
95% cov

XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii

34% id,
86% cov

PP_1170: Gluconolactonase
is similar to:
PaperBLAST

Ga0059261_1893: Xylonolactonase (EC 3.1.1.68) from Sphingomonas koreensis

32% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1345188-1346318 (frame -3) on AE015451
is similar to:
PaperBLAST

XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii
Also see hits to annotated proteins above

33% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory