Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 529 curated entries in PaperBLAST's database that match '3.2.1.21' as complete word(s).

These curated entries have 444 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1403: periplasmic beta-D-glucoside glucohydrolase
is similar to:
PaperBLAST

AAL21070.1: β-glucosidase (BglX;STM2166) (EC 3.2.1.21)

62% id,
100% cov

YohA / b2132: β-D-glucoside glucohydrolase, periplasmic (EC 3.2.1.21) from Escherichia coli
bglX / P33363: β-D-glucoside glucohydrolase, periplasmic (EC 3.2.1.21) from Escherichia coli

61% id,
100% cov

AAA60495.1: β-glucosidase (BglX) (EC 3.2.1.21)

61% id,
97% cov

More...

PP_2145: beta-N-acetylglucosaminidase
is similar to:
PaperBLAST

AEF56853.1: β-glucosidase A3 (EC 3.2.1.21)

32% id,
39% cov

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC 3.2.1.21; EC 3.2.1.52 from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC 3.2.1.21|3.2.1.52|2.4.1.-)

27% id,
40% cov

ABL78891.1: β-glucosidase (Bgl;TpBgl;Tpen_1494) (EC 3.2.1.21)
A1S0B1: beta-glucosidase (EC 3.2.1.21) from Thermofilum pendens

27% id,
41% cov

More...

PP_0194: Transcriptional regulatory protein AlgP
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe

29% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1367508-1367924 (frame -3) on AE015451
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe
Also see hits to annotated proteins above

31% id,
23% cov

1367433-1368155 (frame +3) on AE015451
is similar to:
PaperBLAST

bglD: probable beta-glucosidase D; EC 3.2.1.21 from Emericella nidulans
Also see hits to annotated proteins above

37% id,
10% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory