Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 163 curated entries in PaperBLAST's database that match '3.5.3.1'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_5036: probable formiminoglutamate deiminase
is similar to:
PaperBLAST

hutF / Q4KJP1: formiminoglutamate deiminase subunit (EC 3.5.3.13) from Pseudomonas fluorescens

85% id,
100% cov

Pf1N1B4_1591: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

84% id,
100% cov

PfGW456L13_330: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Pseudomonas fluorescens

84% id,
100% cov

More...

PP_0266: Agmatine deiminase
is similar to:
PaperBLAST

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

85% id,
99% cov

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
aguA / Q9I6J9: agmatine deiminase subunit (EC 3.5.3.12) from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

79% id,
100% cov

A0A0H3G8U9: agmatine deiminase (EC 3.5.3.12) from Listeria monocytogenes

57% id,
99% cov

More...

PP_4523: putative Agmatinase
is similar to:
PaperBLAST

GDAH_HUMAN / Q9BSE5: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Homo sapiens
AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens

63% id,
90% cov

A0A146AXJ2: agmatinase (EC 3.5.3.11) from Apostichopus japonicus

64% id,
88% cov

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries

62% id,
88% cov

More...

PP_2196: agmatinase
is similar to:
PaperBLAST

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

58% id,
90% cov

SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli
SpeB / b2937: agmatinase (EC 3.5.3.11) from Escherichia coli
speB / RF|NP_417412: agmatinase; EC 3.5.3.11 from Escherichia coli
speB / P60651: agmatinase (EC 3.5.3.11) from Escherichia coli

55% id,
90% cov

GPUA_PSEAE / Q9I6K2: Guanidinopropionase; EC 3.5.3.17 from Pseudomonas aeruginosa
Q9I6K2: Guanidinopropionase (EC 3.5.3.17) from Pseudomonas aeruginosa

42% id,
95% cov

More...

PP_4281: guanine deaminase
is similar to:
PaperBLAST

Ac3H11_2549: Formiminoglutamic iminohydrolase (EC 3.5.3.13) from Acidovorax sp.

27% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory