Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 22 curated entries in PaperBLAST's database that match '4.1.1.18' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_4140: lysine decarboxylase
is similar to:
PaperBLAST

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

78% id,
100% cov

LDCC_ECOLI / P52095: Constitutive lysine decarboxylase; LDCC; EC 4.1.1.18 from Escherichia coli
LdcC / b0186: lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli
ldcC / GB|BAA21656.1: lysine decarboxylase, constitutive; EC 4.1.1.18 from Escherichia coli
ldcC / P52095: lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli
P52095: lysine decarboxylase (EC 4.1.1.18) from Escherichia coli

44% id,
88% cov

A0A0H3FP92: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

44% id,
88% cov

More...

PP_2077: diaminopimelate decarboxylase
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

60% id,
94% cov

PP_4871: putative lysine decarboxylase family protein
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

47% id,
89% cov

PP_5227: diaminopimelate decarboxylase
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

34% id,
98% cov

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

26% id,
95% cov

PP_0864: ornithine decarboxylase
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

32% id,
91% cov

PP_2552: DOPA decarboxylase
is similar to:
PaperBLAST

desA / Q9L072: L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072: lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor

29% id,
97% cov

bibA / B6EP92: L-lysine decarboxylase (EC 4.1.1.18) from Aliivibrio salmonicida

26% id,
77% cov

PP_1631: conserved protein of unknown function
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

29% id,
84% cov

PP_0567: Biosynthetic arginine decarboxylase
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
O50657: lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium

23% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2364215-2365495 (frame -1) on AE015451
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca
Also see hits to annotated proteins above

58% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory