Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19'.

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_0567: Biosynthetic arginine decarboxylase
is similar to:
PaperBLAST

Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens

94% id,
100% cov

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

89% id,
100% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

84% id,
100% cov

More...

PP_4140: lysine decarboxylase
is similar to:
PaperBLAST

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

40% id,
99% cov

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

40% id,
99% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

27% id,
54% cov

More...

PP_0864: ornithine decarboxylase
is similar to:
PaperBLAST

ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens
Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens

26% id,
84% cov

Q0PAC6: arginine decarboxylase (EC 4.1.1.19) from Campylobacter jejuni

27% id,
28% cov

O25176: arginine decarboxylase (EC 4.1.1.19) from Helicobacter pylori

26% id,
27% cov

PP_5227: diaminopimelate decarboxylase
is similar to:
PaperBLAST

Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens

28% id,
44% cov

P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

25% id,
49% cov

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

26% id,
43% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory