Curated BLAST
Searching in Pseudomonas putida KT2440 (Putida)
Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).
These curated entries have 16 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Pseudomonas putida KT2440, or try another query
PP_5227: diaminopimelate decarboxylase
is similar to: | PaperBLAST |
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae | 65% id,
100% cov |
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis | 48% id,
99% cov |
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori | 41% id,
98% cov |
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori | 41% id,
98% cov |
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima | 40% id,
98% cov |
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron | 41% id,
93% cov |
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii | 39% id,
97% cov |
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis | 37% id,
95% cov |
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus | 34% id,
98% cov |
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli | 34% id,
98% cov |
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum
P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum | 34% id,
96% cov |
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis | 35% id,
96% cov |
DCDA_MYCTU / P9WIU7: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis
P9WIU7: diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis | 34% id,
96% cov |
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana
AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 38% id,
83% cov |
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana
AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 38% id,
82% cov |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 34% id,
45% cov |
More... |
PP_2077: diaminopimelate decarboxylase
is similar to: | PaperBLAST |
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli | 60% id,
94% cov |
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori | 33% id,
98% cov |
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori | 33% id,
98% cov |
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima | 33% id,
98% cov |
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis | 34% id,
92% cov |
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae | 32% id,
95% cov |
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis | 31% id,
96% cov |
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron | 31% id,
94% cov |
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii | 33% id,
83% cov |
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana
AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 33% id,
81% cov |
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana
AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 32% id,
81% cov |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 32% id,
42% cov |
More... |
PP_0567: Biosynthetic arginine decarboxylase
is similar to: | PaperBLAST |
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron | 25% id,
82% cov |
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii | 23% id,
74% cov |
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae | 27% id,
61% cov |
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis | 28% id,
57% cov |
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori | 27% id,
59% cov |
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori | 25% id,
59% cov |
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana
AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 25% id,
54% cov |
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana
AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 24% id,
49% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory