Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 31 curated entries in PaperBLAST's database that match '4.1.3.30' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_2334: 2-methylisocitrate lyase
is similar to:
PaperBLAST

Pf6N2E2_6061: Methylisocitrate lyase (EC 4.1.3.30) from Pseudomonas fluorescens

91% id,
99% cov

prpB / Q0KAG5: 2-methylcitrate lyase (EC 4.1.3.30) from Cupriavidus necator

81% id,
96% cov

RR42_RS11260: Methylisocitrate lyase (EC 4.1.3.30) from Cupriavidus basilensis

81% id,
96% cov

More...

PP_4116: isocitrate lyase
is similar to:
PaperBLAST

ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis

63% id,
97% cov

ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis

37% id,
62% cov

ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae

36% id,
57% cov

More...

PP_1389: Oxaloacetate decarboxylase
is similar to:
PaperBLAST

PRPB_SALTY / Q56062: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Salmonella typhimurium
prpB / Q56062: 2-methylisocitrate lyase subunit (EC 4.1.3.30) from Salmonella typhimurium

32% id,
94% cov

PRPB_ECOLI / P77541: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Escherichia coli
YahQ / b0331: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli
prpB / P77541: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli

31% id,
94% cov

Pf6N2E2_6061: Methylisocitrate lyase (EC 4.1.3.30) from Pseudomonas fluorescens

30% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory