Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 11 curated entries in PaperBLAST's database that match ''.

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3599: 5-dehydro-4-deoxyglucarate dehydratase
is similar to:

PP_3599: 5-dehydro-4-deoxyglucarate dehydratase (EC from Pseudomonas putida

100% id,
100% cov

PS417_04195: 5-dehydro-4-deoxyglucarate dehydratase (EC from Pseudomonas simiae

93% id,
100% cov

Pf1N1B4_1110: 5-dehydro-4-deoxyglucarate dehydratase (EC from Pseudomonas fluorescens

93% id,
100% cov


PP_1237: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:

KDGD_ACIAD / Q6FFQ1: Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC from Acinetobacter baylyi
kdgD / Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase subunit (EC from Acinetobacter baylyi
Q6FFQ1: 5-dehydro-4-deoxyglucarate dehydratase (EC from Acinetobacter baylyi

29% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory