Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 1 curated entries in PaperBLAST's database that match '4.2.1.52' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1237: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

45% id,
93% cov

PP_2639: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

32% id,
99% cov

PP_2036: putative 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

30% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory