Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 28 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3715: Muconate cycloisomerase 1
is similar to:

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC from Streptomyces sp.

28% id,
55% cov

MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC from Rhizorhabdus wittichii

32% id,
30% cov

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC from Novosphingobium aromaticivorans

28% id,
33% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory