Searching in Pseudomonas putida KT2440 (Putida)
Found 17 curated entries in PaperBLAST's database that match '4.2.1.82' as complete word(s).
These curated entries have 8 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query
| PP_5128: Dihydroxy-acid dehydratase is similar to: | PaperBLAST |
YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli | 31% id, 80% cov |
AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens | 34% id, 57% cov |
Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens | 33% id, 57% cov |
| PP_3715: Muconate cycloisomerase 1 is similar to: | PaperBLAST |
XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii | 26% id, 83% cov |
SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus | 22% id, 87% cov |
| PP_2831: L-fuconate dehydratase is similar to: | PaperBLAST |
SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus | 24% id, 65% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1151258-1153096 (frame +2) on AE015451 is similar to: | PaperBLAST |
xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides | 27% id, 85% cov |
XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides | 27% id, 85% cov |
Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens | 26% id, 85% cov |
Lawrence Berkeley National Laboratory