Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 110 curated entries in PaperBLAST's database that match '4.3.1.1'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3533: putative ornithine cyclodeaminase
is similar to:
PaperBLAST

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

100% id,
100% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

56% id,
96% cov

arcB / J7SH14: ornithine cyclodeaminase subunit (EC 4.3.1.12) from Clostridium sporogenes

55% id,
99% cov

More...

PP_5338: aspartate ammonia-lyase
is similar to:
PaperBLAST

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

90% id,
100% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

58% id,
99% cov

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

57% id,
97% cov

More...

PP_0987: L-serine dehydratase
is similar to:
PaperBLAST

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

89% id,
100% cov

RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis

68% id,
100% cov

BPHYT_RS19340: L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans

67% id,
100% cov

More...

PP_3144: L-serine dehydratase
is similar to:
PaperBLAST

AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

79% id,
100% cov

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

78% id,
100% cov

PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

78% id,
100% cov

More...

PP_0297: L-serine dehydratase
is similar to:
PaperBLAST

AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

76% id,
100% cov

PfGW456L13_4954: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

76% id,
100% cov

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

76% id,
100% cov

More...

PP_3446: threonine deaminase
is similar to:
PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

55% id,
97% cov

THDH_YEAST / P00927: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Saccharomyces cerevisiae

48% id,
92% cov

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

52% id,
82% cov

More...

PP_5149: threonine deaminase
is similar to:
PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

53% id,
97% cov

THDH_YEAST / P00927: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Saccharomyces cerevisiae

51% id,
89% cov

V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum

51% id,
87% cov

More...

PP_2930: putative L-serine dehydratase
is similar to:
PaperBLAST

SDHL_HUMAN / P20132: L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens
SDS / P20132: L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
P20132: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

50% id,
95% cov

SDSL_MOUSE / Q8R238: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus

50% id,
93% cov

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

50% id,
94% cov

More...

PP_0944: fumarate hydratase (class 2)
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

42% id,
99% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

41% id,
98% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

40% id,
98% cov

More...

PP_1755: fumarate hydratase (class 2)
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

41% id,
99% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

41% id,
97% cov

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

39% id,
97% cov

More...

PP_4430: putative threonine dehydratase
is similar to:
PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

41% id,
99% cov

LTHAD_YEAST / P36007: L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; EC 4.3.1.16 from Saccharomyces cerevisiae

36% id,
97% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

35% id,
96% cov

More...

PP_3191: putative threonine ammonia-lyase / dehydratase
is similar to:
PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

39% id,
93% cov

LTHAD_PSESP / A4F2N8: L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; L-THA DH; EC 4.3.1.16 from Pseudomonas sp.
thadh / A4F2N8: L-threo-3-hydroxy aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.
A4F2N8: threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.

36% id,
99% cov

L0N5C4: threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.

36% id,
99% cov

More...

PP_4431: Ornithine cyclodeaminase 1
is similar to:
PaperBLAST

arcB / J7SH14: ornithine cyclodeaminase subunit (EC 4.3.1.12) from Clostridium sporogenes

28% id,
79% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

30% id,
72% cov

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

32% id,
61% cov

PP_3190: Ornithine cyclodeaminase/mu-crystallin family protein
is similar to:
PaperBLAST

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

26% id,
83% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

26% id,
81% cov

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

29% id,
73% cov

More...

PP_2009: putative 1-aminocyclopropane-1-carboxylate deaminase
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

30% id,
53% cov

PP_0083: tryptophan synthase beta chain
is similar to:
PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

30% id,
46% cov

PP_1654: cysteine synthase B
is similar to:
PaperBLAST

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

27% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1848494-1849453 (frame +2) on AE015451
is similar to:
PaperBLAST

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum
Also see hits to annotated proteins above

26% id,
36% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory