Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 13 curated entries in PaperBLAST's database that match '5.1.1.4'.

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1258: 4-hydroxyproline epimerase
is similar to:
PaperBLAST

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

38% id,
98% cov

PRCMB_TRYCC / Q868H8: Proline racemase B; TcPA45-B; TcPRACB; EC 5.1.1.4 from Trypanosoma cruzi
Q868H8: proline racemase (EC 5.1.1.4) from Trypanosoma cruzi

37% id,
98% cov

B8LFE4: proline racemase (EC 5.1.1.4) from Trypanosoma vivax

37% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory