Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 6 curated entries in PaperBLAST's database that match '5.1.1.5'.

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3722: Alanine racemase
is similar to:
PaperBLAST

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

49% id,
99% cov

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

26% id,
97% cov

PP_5269: alanine racemase, PLP-binding
is similar to:
PaperBLAST

LYSR_OENOB / Q04HB7: Lysine racemase; EC 5.1.1.5 from Oenococcus oeni
Q04HB7: lysine racemase (EC 5.1.1.5) from Oenococcus oeni

28% id,
98% cov

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

27% id,
84% cov

PP_0432: N-acetyl-gamma-glutamyl-phosphate reductase 1
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

44% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory