Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 86 curated entries in PaperBLAST's database that match '5.4.99.5'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1769: chorismate mutase/Prephenate dehydratase
is similar to:
PaperBLAST

CMPDT_STUST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Stutzerimonas stutzeri

87% id,
100% cov

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

30% id,
97% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

30% id,
97% cov

More...

PP_0417: Anthranilate synthase component 1
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

31% id,
66% cov

PP_2170: putative enzyme, chorismate mutase family protein
is similar to:
PaperBLAST

CHMU_METJA / Q57696: Chorismate mutase; CM; Monofunctional chorismate mutase AroQ(f); EC 5.4.99.5 from Methanocaldococcus jannaschii

25% id,
78% cov

PP_1611: 2-dehydro-3-deoxyphosphooctonate aldolase
is similar to:
PaperBLAST

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

29% id,
63% cov

PP_1807: 2-dehydro-3-deoxyphosphooctonate aldolase
is similar to:
PaperBLAST

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

28% id,
61% cov

PP_2151: soluble pyridine nucleotide transhydrogenase
is similar to:
PaperBLAST

FCF2_ECOLX / Q6E7F1: dTDP-fucopyranose mutase; dTDP-alpha-D-fucopyranose mutase; EC 5.4.99.59 from Escherichia coli
fcfB / Q6E7F1: dTDP-fucopyranose mutase (EC 5.4.99.59) from Escherichia coli
Q6E7F1: dTDP-fucopyranose mutase (EC 5.4.99.59) from Escherichia coli

43% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory