Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3715: Muconate cycloisomerase 1
is similar to:
PaperBLAST

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

96% id,
100% cov

salC / Q4KPK2: muconate cycloisomerase I (EC 5.5.1.1; EC 5.5.1.7) from Pseudomonas reinekei
Q4KPK2: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

82% id,
100% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

77% id,
99% cov

More...

PP_4757: D-glucarate dehydratase / L-idarate epimerase
is similar to:
PaperBLAST

C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

26% id,
56% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory