Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 23 curated entries in PaperBLAST's database that match '6.1.1.23' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1213: Aspartate--tRNA ligase is similar to:	PaperBLAST
SYDND_PSEAE / Q51422: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa	88% id, 100% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	62% id, 100% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	53% id, 99% cov
SYDND_HELPY / P56459: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori	51% id, 100% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	51% id, 98% cov
Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus	50% id, 99% cov
DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris	52% id, 95% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	47% id, 100% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	45% id, 99% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	47% id, 91% cov
CCNA_01969: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus	42% id, 99% cov
PGA1_c24530: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Phaeobacter inhibens	40% id, 99% cov
Dshi_2633: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Dinoroseobacter shibae	40% id, 99% cov
SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus	35% id, 70% cov
SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum	32% id, 69% cov
SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei	37% id, 59% cov
SYDND_DEIRA / Q9RVH4: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase 2; AspRS2; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Deinococcus radiodurans aspS2 / Q9RVH4: aspartyl-tRNA synthetase, non-discriminating (EC 6.1.1.23) from Deinococcus radiodurans	30% id, 66% cov
erdS / Q4WKG3: aspartate--tRNA ligase/ergosteryl-3β-O-L-aspartate synthase (EC 6.1.1.23; EC 2.3.2.37) from Aspergillus fumigatus	29% id, 29% cov
SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum	42% id, 19% cov
More...

PP_1496: Lysine--tRNA ligase is similar to:	PaperBLAST
SYDND_METTH / O26328: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanothermobacter thermautotrophicus O26328: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Methanothermobacter thermautotrophicus	25% id, 98% cov
SYDND_HALSA / O07683: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Halobacterium salinarum O07683: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Halobacterium salinarum	27% id, 90% cov
SYDND_METMA / Q8Q0R2: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Methanosarcina mazei	27% id, 90% cov
C4LZN0: aspartate-tRNA ligase (EC 6.1.1.12); aspartate-tRNAAsn ligase (EC 6.1.1.23) from Entamoeba histolytica	28% id, 63% cov
SYDND_HELPY / P56459: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori	24% id, 62% cov
Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus	25% id, 59% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	25% id, 57% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	27% id, 52% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	26% id, 55% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	25% id, 56% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	25% id, 52% cov
erdS / Q4WKG3: aspartate--tRNA ligase/ergosteryl-3β-O-L-aspartate synthase (EC 6.1.1.23; EC 2.3.2.37) from Aspergillus fumigatus	25% id, 46% cov
DvMF_2038: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Desulfovibrio vulgaris	29% id, 31% cov
aspS / P21889: aspartate—tRNA ligase (EC 6.1.1.12; EC 6.1.1.23) from Escherichia coli	27% id, 32% cov
Dshi_2633: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Dinoroseobacter shibae	27% id, 31% cov
Q9KDG1: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Alkalihalobacillus halodurans	30% id, 27% cov
O32038: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bacillus subtilis	28% id, 29% cov
SYDND_HELPY / P56459: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Helicobacter pylori	28% id, 30% cov
SYDND_CHLTR / O84546: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Chlamydia trachomatis	23% id, 33% cov
Synpcc7942_1313: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Synechococcus elongatus	28% id, 25% cov
CCNA_01969: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Caulobacter crescentus	28% id, 25% cov
SYDND_PSEAE / Q51422: Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; AspRS; Non-discriminating aspartyl-tRNA synthetase; ND-AspRS; EC 6.1.1.23 from Pseudomonas aeruginosa	31% id, 20% cov
Q6MI59: aspartate-tRNAAsn ligase (EC 6.1.1.23) from Bdellovibrio bacteriovorus	29% id, 20% cov
aspS1 / Q9RUN7: aspartyl-tRNA synthetase subunit (EC 6.1.1.23) from Deinococcus radiodurans	38% id, 14% cov
PGA1_c24530: aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) from Phaeobacter inhibens	33% id, 14% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory