Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 12 curated entries in PaperBLAST's database that match '6.2.1.30'.

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3279: phenylacetate-CoA ligase
is similar to:
PaperBLAST

PAAK_PSEPU / O33469: Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Pseudomonas putida

97% id,
100% cov

B4E7B5: phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia

70% id,
98% cov

B4EL89: phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia

68% id,
99% cov

More...

PP_4549: long-chain-fatty-acid/CoA ligase
is similar to:
PaperBLAST

O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
97% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
90% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

32% id,
65% cov

PP_3458: Butyrate--CoA ligase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
96% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
94% cov

PP_2795: AMP-binding domain protein
is similar to:
PaperBLAST

O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
98% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
95% cov

PP_2038: long-chain-fatty-acid--CoA ligase
is similar to:
PaperBLAST

O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
89% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
94% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
90% cov

More...

PP_4550: long-chain-fatty-acid/CoA ligase
is similar to:
PaperBLAST

O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
90% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

33% id,
65% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

34% id,
63% cov

More...

PP_4063: putative Long-chain-fatty-acid-CoA ligase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
92% cov

PP_3553: AMP-binding domain protein
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
88% cov

O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
84% cov

PP_4243: non-ribosomal peptide synthase (subunit of ferribactin synthase)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

26% id,
90% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
57% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

23% id,
67% cov

More...

PP_0763: Medium-chain-fatty-acid CoA ligase
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

25% id,
93% cov

O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

25% id,
94% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

25% id,
92% cov

PP_2351: propionyl-CoA synthetase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

24% id,
94% cov

PP_4702: acetyl-CoA synthetase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

23% id,
91% cov

PP_4219: non-ribosomal peptide synthetase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

23% id,
84% cov

PP_3356: feruloyl-CoA-synthetase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

22% id,
78% cov

PP_4221: non-ribosomal peptide synthetase (subunit of ferribactin synthase)
is similar to:
PaperBLAST

O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
62% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

43% id,
7% cov

PP_4220: non-ribosomal peptide synthetase (subunit of ferribactin synthase)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

24% id,
70% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 16 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory