Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 1 curated entries in PaperBLAST's database that match '2-deoxy-3-keto-D-ribonoate cleavage enzyme' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_0303: dehydrocarnitine cleavage enzyme
is similar to:
PaperBLAST

PS417_07250: 2-deoxy-3-keto-D-ribonoate cleavage enzyme from Pseudomonas simiae

39% id,
46% cov

PS417_07250: 2-deoxy-3-keto-D-ribonoate cleavage enzyme from Pseudomonas simiae

41% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory