Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 2 curated entries in PaperBLAST's database that match '3-isopropylmalate dehydratase%LeuC' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_1985: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

64% id,
100% cov

PP_2336: aconitate hydratase 1
is similar to:
PaperBLAST

LeuC / b0072: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli
leuC / P0A6A6: 3-isopropylmalate dehydratase subunit LeuC (EC 4.2.1.33) from Escherichia coli

29% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory