Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas putida KT2440 (Putida)

Found 3 curated entries in PaperBLAST's database that match 'N-succinylcitrulline desuccinylase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas putida KT2440, or try another query

PP_3571: putative Acetylornithine deacetylase
is similar to:
PaperBLAST

Echvi_3851: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Echinicola vietnamensis

28% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5915690-5916856 (frame -1) on AE015451
is similar to:
PaperBLAST

BT3549: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Bacteroides thetaiotaomicron

24% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory