Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 13 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2235: NAD dependent epimerase/dehydratase family protein (RefSeq)
is similar to:

PS417_17360: D-galacturonate dehydrogenase (EC from Pseudomonas simiae

26% id,
92% cov

Pf1N1B4_4511: D-galacturonate dehydrogenase (EC from Pseudomonas fluorescens

25% id,
93% cov

HSERO_RS23040: D-galacturonate dehydrogenase (EC from Herbaspirillum seropedicae

25% id,
90% cov


Sama_1185: steroid dehydrogenase (RefSeq)
is similar to:

URODH_PSEPK / Q88NN6: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC from Pseudomonas putida
PP_1171: Uronate dehydrogenase (EC from Pseudomonas putida
Q88NN6: uronate dehydrogenase (EC from Pseudomonas putida

28% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory