Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 58 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0052: shikimate dehydrogenase (RefSeq) is similar to:	PaperBLAST
Q88RQ5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida	57% id, 100% cov
AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae	55% id, 98% cov
AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli P15770: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Escherichia coli	49% id, 99% cov
AROE_HAEIN / P43876: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae P43876: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Haemophilus influenzae	45% id, 100% cov
Q88IJ7: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida	45% id, 98% cov
AROE_STAEQ / Q5HNV1: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis Q5HNV1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Staphylococcus epidermidis	36% id, 100% cov
AROE_HELPX / Q56S04: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori Q56S04: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Helicobacter pylori	38% id, 90% cov
AROE_HELPY / P56119: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori	38% id, 90% cov
AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus O67049: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aquifex aeolicus	36% id, 92% cov
AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii	33% id, 98% cov
AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus Q5SJF8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermus thermophilus	33% id, 98% cov
O27957: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Archaeoglobus fulgidus	32% id, 98% cov
CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus	36% id, 87% cov
Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida	30% id, 94% cov
A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum	29% id, 97% cov
P0A6D5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Escherichia coli	29% id, 94% cov
BT4215: shikimate dehydrogenase (EC 1.1.1.25) from Bacteroides thetaiotaomicron	27% id, 100% cov
Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida	30% id, 89% cov
AROE_LISMO / Q8Y9N5: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Listeria monocytogenes	28% id, 91% cov
A0A168S2B8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	33% id, 50% cov
A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis	30% id, 52% cov
A0A168S2H6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	29% id, 52% cov
A0A6P8EJ47: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Punica granatum	31% id, 48% cov
D7TUX1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	29% id, 51% cov
A0A5H2WVH6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Eucalyptus camaldulensis	30% id, 49% cov
A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis	30% id, 47% cov
A0A168S2G5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	29% id, 49% cov
A0A3G3BK08: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Camellia sinensis	28% id, 51% cov
DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana	31% id, 44% cov
A0A0A0LQ48: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Cucumis sativus	28% id, 48% cov
Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum	29% id, 45% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	39% id, 10% cov
More...

Sama_2567: glutamyl-tRNA reductase (RefSeq) is similar to:	PaperBLAST
Q88IJ7: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida	25% id, 43% cov
Q88RQ5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida	30% id, 33% cov
Q9WYI1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermotoga maritima	29% id, 32% cov
A0A5H2WVH6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Eucalyptus camaldulensis	30% id, 24% cov
A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis	30% id, 24% cov
DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana	31% id, 23% cov
A0A168S2G5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	33% id, 20% cov
A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis	27% id, 24% cov
Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum	30% id, 21% cov
A0A168S2H6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera	33% id, 17% cov
A0A0A0LQ48: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Cucumis sativus	35% id, 14% cov
More...

Sama_1734: 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans	40% id, 28% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	39% id, 28% cov
Q6W3D0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii	39% id, 2% cov

Sama_3367: 3-dehydroquinate synthase (RefSeq) is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans	40% id, 21% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	32% id, 24% cov
Q6W3D0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii	36% id, 5% cov

Sama_1724: NADH:flavin oxidoreductase/NADH oxidase (RefSeq) is similar to:	PaperBLAST
A0A3G3BK08: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Camellia sinensis	28% id, 23% cov

Sama_0611: fumarate reductase flavoprotein subunit precursor (RefSeq)
is similar to:

PaperBLAST

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

25% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory