Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 148 curated entries in PaperBLAST's database that match '1.1.1.28'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 25 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0612: D-lactate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

83% id,
100% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

62% id,
100% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

62% id,
100% cov

More...

Sama_0004: alcohol dehydrogenase, zinc-binding (RefSeq)
is similar to:
PaperBLAST

FRMA_ECOLI / P25437: S-(hydroxymethyl)glutathione dehydrogenase; Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; EC 1.1.1.284; EC 1.1.1.1; EC 1.1.1.- from Escherichia coli
AdhC / b0356: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli
frmA / GB|BAA22412.1: S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.-; EC 1.1.1.1; EC 1.1.1.284 from Escherichia coli
frmA / P25437: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli

73% id,
100% cov

ADHH_GADMO / P81600: Alcohol dehydrogenase class-3 chain H; Alcohol dehydrogenase class-III chain H; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Gadus morhua

64% id,
99% cov

ADHX_SPAAU / P79896: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Sparus aurata

64% id,
99% cov

More...

Sama_2423: isocitrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

HICDH_THET2 / Q72IW9: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus

46% id,
98% cov

IDH-V / Q945K7: NAD+-dependent isocitrate dehydrogenase catalytic subunit (EC 1.1.1.286) from Arabidopsis thaliana

50% id,
88% cov

IDH3A / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (EC 1.1.1.286) from Homo sapiens

47% id,
90% cov

More...

Sama_0336: 3-isopropylmalate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

HICDH_THET2 / Q72IW9: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Isocitrate/homoisocitrate dehydrogenase; Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.286 from Thermus thermophilus

40% id,
94% cov

Q5JFV8: isocitrate-homoisocitrate dehydrogenase (EC 1.1.1.286) from Thermococcus kodakarensis

39% id,
80% cov

HICDH_PYRHO / O59394: Isocitrate/homoisocitrate dehydrogenase; HICDH; Beta-decarboxylating dehydrogenase; EC 1.1.1.286 from Pyrococcus horikoshii

34% id,
87% cov

More...

Sama_1980: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

38% id,
97% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

37% id,
97% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

37% id,
88% cov

More...

Sama_2811: glycerate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

35% id,
96% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

36% id,
83% cov

HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli
ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli
ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

32% id,
89% cov

More...

Sama_2949: D-3-phosphoglycerate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

34% id,
93% cov

Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa

30% id,
91% cov

Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis

32% id,
83% cov

More...

Sama_1381: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

32% id,
98% cov

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

32% id,
98% cov

A0A0K1H1P6: xanthoxin dehydrogenase (EC 1.1.1.288) from Pisum sativum

30% id,
92% cov

More...

Sama_3393: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

32% id,
95% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

32% id,
94% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

35% id,
86% cov

More...

Sama_1741: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q58LW6: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

31% id,
97% cov

Q308C1: D-arabinitol 4-dehydrogenase (EC 1.1.1.11); D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Gluconobacter oxydans

31% id,
97% cov

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

31% id,
89% cov

More...

Sama_0052: shikimate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

30% id,
94% cov

A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

29% id,
97% cov

Q9X5C9: quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

29% id,
97% cov

More...

Sama_0097: L-threonine 3-dehydrogenase (RefSeq)
is similar to:
PaperBLAST

ARD1_UROFA / Q4R0J7: D-arabinitol dehydrogenase 1; NADP-dependent D-arabitol dehydrogenase; EC 1.1.1.287 from Uromyces fabae
Q4R0J7: D-arabinitol dehydrogenase (NADP+) (EC 1.1.1.287) from Uromyces viciae-fabae

29% id,
97% cov

FRMA_ECOLI / P25437: S-(hydroxymethyl)glutathione dehydrogenase; Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; EC 1.1.1.284; EC 1.1.1.1; EC 1.1.1.- from Escherichia coli
AdhC / b0356: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli
frmA / GB|BAA22412.1: S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.-; EC 1.1.1.1; EC 1.1.1.284 from Escherichia coli
frmA / P25437: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Escherichia coli

28% id,
98% cov

ADHX_DROME / P46415: Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; Octanol dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.73; EC 1.1.1.284 from Drosophila melanogaster

27% id,
92% cov

More...

Sama_0517: D-beta-hydroxybutyrate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

31% id,
88% cov

ABA2_ARATH / Q9C826: Xanthoxin dehydrogenase; Protein ABSCISIC ACID DEFICIENT 2; Protein GLUCOSE INSENSITIVE 1; Protein IMPAIRED SUCROSE INDUCTION 4; Protein SALOBRENO 3; Protein SALT RESISTANT 1; Protein SUGAR INSENSITIVE 4; Short-chain alcohol dehydrogenase ABA2; Short-chain dehydrogenase reductase 1; AtSDR1; Xanthoxin oxidase; EC 1.1.1.288 from Arabidopsis thaliana
ABA2 / Q9C826: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana
Q9C826: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

29% id,
92% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

29% id,
91% cov

More...

Sama_2153: erythronate-4-phosphate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

28% id,
95% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

28% id,
93% cov

O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum

31% id,
70% cov

More...

Sama_2709: D-isomer specific 2-hydroxyacid dehydrogenase family protein (RefSeq)
is similar to:
PaperBLAST

U6C832: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Paecilomyces variotii

26% id,
98% cov

Q96V39: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Ogataea angusta

25% id,
100% cov

ADHL_GADMO / P81601: Alcohol dehydrogenase class-3 chain L; Alcohol dehydrogenase class-III chain L; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Gadus morhua

25% id,
96% cov

More...

Sama_1367: short chain dehydrogenase/reductase family oxidoreductase (RefSeq)
is similar to:
PaperBLAST

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

27% id,
95% cov

Sama_2250: acetoacetyl-CoA reductase (RefSeq)
is similar to:
PaperBLAST

SOU1_CANAL / P87219: Sorbose reductase SOU1; Sorbitol utilization protein SOU1; EC 1.1.1.289 from Candida albicans
SOU1 / GI|2183243: Sorbose reductase SOU1; EC 1.1.1.289 from Candida albicans
P87219: sorbose reductase (EC 1.1.1.289) from Candida albicans

29% id,
87% cov

Sama_2776: aldo/keto reductase family oxidoreductase (RefSeq)
is similar to:
PaperBLAST

C4R5F8: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Komagataella phaffii

27% id,
93% cov

Sama_2242: dTDP-glucose 4,6-dehydratase (RefSeq)
is similar to:
PaperBLAST

RMD_ANETH / Q6T1X6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Aneurinibacillus thermoaerophilus

25% id,
99% cov

RMD_PSEAE / Q9HTB6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Pseudomonas aeruginosa
Q9HTB6: GDP-4-dehydro-6-deoxy-D-mannose reductase (EC 1.1.1.281) from Pseudomonas aeruginosa

24% id,
90% cov

Sama_2440: iron-sulfur cluster-binding protein (RefSeq)
is similar to:
PaperBLAST

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

25% id,
95% cov

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

26% id,
52% cov

Sama_2235: NAD dependent epimerase/dehydratase family protein (RefSeq)
is similar to:
PaperBLAST

RMD_ANETH / Q6T1X6: GDP-6-deoxy-D-mannose reductase; EC 1.1.1.281 from Aneurinibacillus thermoaerophilus

23% id,
97% cov

Sama_0389: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

A4PB64: sorbose reductase (EC 1.1.1.289) from Gluconobacter frateurii

30% id,
73% cov

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

31% id,
65% cov

Q7XZH5: xanthoxin dehydrogenase (EC 1.1.1.288) from Oryza sativa

26% id,
65% cov

Sama_3039: D-isomer specific 2-hydroxyacid dehydrogenase family protein (RefSeq)
is similar to:
PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

26% id,
78% cov

LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii
ldhA / OMNI|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii

25% id,
75% cov

GB|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus
P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus

25% id,
76% cov

More...

Sama_2071: oxidoreductase, FAD-binding, putative (RefSeq)
is similar to:
PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

27% id,
75% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

27% id,
60% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

24% id,
56% cov

Sama_2121: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Q9SCU0: xanthoxin dehydrogenase (EC 1.1.1.288) from Arabidopsis thaliana

28% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 24 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3240947-3242194 (frame +2) on 248323
is similar to:
PaperBLAST

U6C832: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Paecilomyces variotii
Also see hits to annotated proteins above

26% id,
100% cov

Q5AVP8: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) from Aspergillus nidulans
Also see hits to annotated proteins above

24% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory