Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2441: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

83% id,
100% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

28% id,
34% cov

Sama_2442: iron-sulfur cluster-binding protein (RefSeq)
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

80% id,
97% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

37% id,
56% cov

Sama_2443: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

lldF / Q8EGS6: L-lactate dehydrogenase LldF subunit (EC 1.1.2.3) from Shewanella oneidensis

55% id,
99% cov

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

37% id,
49% cov

Sama_1832: electron transport complex protein RnfC (RefSeq)
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

30% id,
26% cov

Sama_0857: glutamate synthase subunit alpha (RefSeq)
is similar to:
PaperBLAST

SM_b20850: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Sinorhizobium meliloti

30% id,
21% cov

W1QKE8: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Ogataea angusta

28% id,
19% cov

CYB2_YEAST / P00175: L-lactate dehydrogenase (cytochrome); Cytochrome b2; Flavocytochrome b2; FCB2; L-lactate ferricytochrome c oxidoreductase; L-LCR; EC 1.1.2.3 from Saccharomyces cerevisiae
CYB2 / P00175: L-lactate dehydrogenase subunit (EC 1.1.2.3) from Saccharomyces cerevisiae
P00175: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Saccharomyces cerevisiae

35% id,
14% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory