Curated BLAST for Genomes


Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 21 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1569: homogentisate 1,2-dioxygenase (RefSeq)
is similar to:

SO1963: Homogentisate 1,2-dioxygenase (EC from Shewanella oneidensis

88% id,
100% cov

Psest_3513: Homogentisate 1,2-dioxygenase (EC from Pseudomonas stutzeri

30% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory