Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 33 curated entries in PaperBLAST's database that match '1.3.1.12'.

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0894: bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

58% id,
100% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

54% id,
98% cov

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

29% id,
94% cov

More...

Sama_1741: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

42% id,
90% cov

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

43% id,
86% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

44% id,
84% cov

More...

Sama_1980: 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

30% id,
88% cov

Sama_3393: 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq)
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

31% id,
85% cov

SPS19_YEAST / P32573: Peroxisomal 2,4-dienoyl-CoA reductase SPS19 [(3E)-enoyl-CoA-producing]; Sporulation-specific protein SPX19; EC 1.3.1.124 from Saccharomyces cerevisiae
SPS19 / P32573: 2,4-dienoyl-CoA reductase (EC 1.3.1.124) from Saccharomyces cerevisiae

26% id,
84% cov

Sama_2121: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

DECR2_ARATH / Q9LTV6: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; EC 1.3.1.124 from Arabidopsis thaliana

26% id,
83% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

24% id,
75% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

23% id,
65% cov

Sama_0389: short chain dehydrogenase (RefSeq)
is similar to:
PaperBLAST

CHCA_STRCU / P95727: 1-cyclohexenylcarbonyl-CoA reductase; Cyclohexane-1-carbonyl-CoA reductase (NADP(+)); EC 1.3.1.120 from Streptomyces collinus
chcA / P95727: cyclohexane-1-carbonyl-CoA dehydrogenase monomer (EC 1.3.1.120) from Streptomyces collinus

28% id,
71% cov

DECR2_HUMAN / Q9NUI1: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; pDCR; 2,4-dienoyl-CoA reductase 2; Short chain dehydrogenase/reductase family 17C member 1; EC 1.3.1.124 from Homo sapiens

27% id,
71% cov

DECR2_RAT / Q9Z2M4: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; 2,4-dienoyl-CoA reductase 2; DCR-AKL; pVI-AKL; EC 1.3.1.124 from Rattus norvegicus

25% id,
71% cov

More...

Sama_0898: prephenate dehydratase / chorismate mutase / phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq)
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

30% id,
57% cov

P43902: prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae

23% id,
33% cov

TyrA / b2600: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli
tyrA / P07023: fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli

27% id,
22% cov

Sama_2250: acetoacetyl-CoA reductase (RefSeq)
is similar to:
PaperBLAST

DECR2_ARATH / Q9LTV6: Peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]; EC 1.3.1.124 from Arabidopsis thaliana

27% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory