Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1592: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

48% id,
97% cov

AZOBR_RS00190: L-glutamate dehydrogenase (NAD+) (EC 1.4.1.2) from Azospirillum brasilense

47% id,
100% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

47% id,
99% cov

More...

Sama_2067: leucine dehydrogenase (RefSeq)
is similar to:
PaperBLAST

GUDB_BACSU / P50735: Cryptic catabolic NAD-specific glutamate dehydrogenase GudB; NAD-GDH; EC 1.4.1.2 from Bacillus subtilis

30% id,
75% cov

Q0E5I0: glutamate dehydrogenase (EC 1.4.1.2) from Halobacillus halophilus

29% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory