Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 23 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_1533: D-amino-acid dehydrogenase (RefSeq)
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

31% id,
99% cov

P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

42% id,
9% cov

Sama_2155: glycine/D-amino acid oxidase (deaminating)-like protein (RefSeq)
is similar to:
PaperBLAST

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

47% id,
13% cov

Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

47% id,
13% cov

Sama_2638: putative oxidoreductase (RefSeq)
is similar to:
PaperBLAST

amaD / Q88GX1: D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida

40% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory