Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 61 curated entries in PaperBLAST's database that match '1.8.1.4' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0377: dihydrolipoamide dehydrogenase (RefSeq)
is similar to:
PaperBLAST

DLDH_ECOLI / P0A9P0: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; Glycine cleavage system L protein; EC 1.8.1.4 from Escherichia coli
Lpd / b0116: lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli
lpd / SP|P0A9P1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Escherichia coli
lpd / P0A9P0: lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli
P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

88% id,
100% cov

DLDH_HYMDI / P80647: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta

61% id,
92% cov

pdhL: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Cupriavidus necator
Q0KBV8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Cupriavidus necator

66% id,
80% cov

More...

Sama_3543: glutathione reductase (RefSeq)
is similar to:
PaperBLAST

DLDH_HYMDI / P80647: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta

45% id,
89% cov

DLDH_THESS / P85207: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Thermus scotoductus

33% id,
95% cov

pdhD / GB|CAB13334.1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Bacillus subtilis
pdhD / P21880: dihydrolipoyl dehydrogenase component subunit (EC 1.8.1.4) from Bacillus subtilis

32% id,
95% cov

More...

Sama_2998: GMC family oxidoreductase (RefSeq)
is similar to:
PaperBLAST

DLDH_HYMDI / P80647: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta

47% id,
64% cov

Q8MUB0: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Bombyx mori

53% id,
7% cov

DLDH_MOUSE / O08749: Dihydrolipoyl dehydrogenase, mitochondrial; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Mus musculus

45% id,
7% cov

Sama_0618: alkyl hydroperoxide reductase, F subunit (RefSeq)
is similar to:
PaperBLAST

DLDH_CORGL / Q8NTE1: Dihydrolipoyl dehydrogenase; LPD; Dihydrolipoamide dehydrogenase; E3 component of alpha-ketoacid dehydrogenase complexes; EC 1.8.1.4 from Corynebacterium glutamicum

27% id,
73% cov

Q04829: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Haloferax volcanii

23% id,
69% cov

LPD1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Candida albicans

25% id,
64% cov

More...

Sama_1769: thioredoxin reductase (RefSeq)
is similar to:
PaperBLAST

P50970: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Zymomonas mobilis

24% id,
68% cov

Q04829: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Haloferax volcanii

23% id,
70% cov

lpdA / O84561: dihydrolipoyl dehydrogenase subunit (EC 1.8.1.4) from Chlamydia trachomatis

29% id,
17% cov

More...

Sama_0376: dihydrolipoamide acetyltransferase (RefSeq)
is similar to:
PaperBLAST

pdhL: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Cupriavidus necator
Q0KBV8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Cupriavidus necator

34% id,
45% cov

pdhL: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Cupriavidus necator
Q0KBV8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Cupriavidus necator

47% id,
21% cov

pdhL: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Cupriavidus necator
Q0KBV8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Cupriavidus necator

48% id,
21% cov

More...

Sama_1724: NADH:flavin oxidoreductase/NADH oxidase (RefSeq)
is similar to:
PaperBLAST

DLDH_YEAST / P09624: Dihydrolipoyl dehydrogenase, mitochondrial; DLD; 2-oxoglutarate dehydrogenase complex component E3; OGDC-E3; OGDHC subunit E3; Alpha-ketoglutarate dehydrogenase complex subunit E3; alpha-KGDHC subunit E3; Dihydrolipoamide dehydrogenase; Dihydrolipoamide:NAD(+) oxidoreductase; Glycine decarboxylase complex subunit L; GDC subunit L; Lipoamide dehydrogenase component of pyruvate dehydrogenase complex; Pyruvate dehydrogenase complex E3 component; PDC subunit E3; PDH complex subunit E3; EC 1.8.1.4 from Saccharomyces cerevisiae

21% id,
65% cov

Sama_3389: FAD-binding protein (RefSeq)
is similar to:
PaperBLAST

DLDH_CORGL / Q8NTE1: Dihydrolipoyl dehydrogenase; LPD; Dihydrolipoamide dehydrogenase; E3 component of alpha-ketoacid dehydrogenase complexes; EC 1.8.1.4 from Corynebacterium glutamicum

25% id,
32% cov

Q8VPK7: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Streptococcus pneumoniae

26% id,
13% cov

Sama_3655: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq)
is similar to:
PaperBLAST

A5N930: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Clostridium kluyveri

25% id,
31% cov

LPD1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Candida albicans

27% id,
22% cov

Sama_0856: glutamate synthase subunit beta (RefSeq)
is similar to:
PaperBLAST

DLDH_ECOLI / P0A9P0: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; Glycine cleavage system L protein; EC 1.8.1.4 from Escherichia coli
Lpd / b0116: lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli
lpd / SP|P0A9P1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Escherichia coli
lpd / P0A9P0: lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli
P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

26% id,
28% cov

Sama_1711: dihydrolipoamide acetyltransferase (RefSeq)
is similar to:
PaperBLAST

pdhL: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Cupriavidus necator
Q0KBV8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Cupriavidus necator

35% id,
20% cov

Sama_3589: HlyD family secretion protein (RefSeq)
is similar to:
PaperBLAST

lpdA / B3TZD6: dihydrolipoamide dehydrogenase (EC 1.8.1.4) from Advenella kashmirensis

34% id,
17% cov

Sama_0611: fumarate reductase flavoprotein subunit precursor (RefSeq)
is similar to:
PaperBLAST

lpdA / O84561: dihydrolipoyl dehydrogenase subunit (EC 1.8.1.4) from Chlamydia trachomatis

31% id,
18% cov

Sama_1770: alanine dehydrogenase (RefSeq)
is similar to:
PaperBLAST

pdhD / GB|CAB13334.1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Bacillus subtilis
pdhD / P21880: dihydrolipoyl dehydrogenase component subunit (EC 1.8.1.4) from Bacillus subtilis

25% id,
19% cov

Sama_1533: D-amino-acid dehydrogenase (RefSeq)
is similar to:
PaperBLAST

DLDH_CHATD / G0SB20: Dihydrolipoamide dehydrogenase; Lipoamide dehydrogenase component of pyruvate dehydrogenase complex; Pyruvate dehydrogenase complex E3 component; EC 1.8.1.4 from Chaetomium thermophilum

32% id,
12% cov

Sama_3195: acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq)
is similar to:
PaperBLAST

acoL: TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Clostridium magnum

35% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory