Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3'.

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0258: ornithine carbamoyltransferase (RefSeq)
is similar to:
PaperBLAST

OTC_MORAB / Q9K4Y9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi

62% id,
100% cov

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

47% id,
96% cov

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

47% id,
97% cov

More...

Sama_0840: aspartate carbamoyltransferase (RefSeq)
is similar to:
PaperBLAST

O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi

31% id,
98% cov

OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus
Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus

31% id,
98% cov

argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis

30% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory