Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 85 curated entries in PaperBLAST's database that match '2.3.1.16' as complete word(s).

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_0031: 3-ketoacyl-CoA thiolase (RefSeq)
is similar to:
PaperBLAST

Sama_0031: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella amazonensis

100% id,
100% cov

Shewana3_0023: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Shewanella sp.

92% id,
100% cov

fadA / A0A140NDQ6: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli

74% id,
100% cov

More...

Sama_1375: Acetyl-CoA C-acetyltransferase (RefSeq)
is similar to:
PaperBLAST

SO1677: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) from Shewanella oneidensis

88% id,
98% cov

PfGW456L13_2982: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Pseudomonas fluorescens

61% id,
99% cov

AO353_25685: acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) from Pseudomonas fluorescens

61% id,
99% cov

More...

Sama_2168: 3-ketoacyl-CoA thiolase (RefSeq)
is similar to:
PaperBLAST

FADI_ECOLI / P76503: 3-ketoacyl-CoA thiolase FadI; ACSs; Acetyl-CoA acyltransferase; Acyl-CoA ligase; Beta-ketothiolase; Fatty acid oxidation complex subunit beta; EC 2.3.1.16 from Escherichia coli
FadI / b2342: 3-ketoacyl-CoA thiolase FadI (EC 2.3.1.16) from Escherichia coli
fadI / P76503: 3-ketoacyl-CoA thiolase FadI (EC 2.3.1.16) from Escherichia coli
fadI / A0A140N9I7: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) from Escherichia coli

71% id,
99% cov

ECHB_MOUSE / Q99JY0: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Mus musculus

40% id,
88% cov

ECHB_RAT / Q60587: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Rattus norvegicus

40% id,
88% cov

More...

Sama_2167: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

44% id,
94% cov

Sama_0032: multifunctional fatty acid oxidation complex subunit alpha (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

33% id,
93% cov

Sama_1978: 3-oxoacyl-(acyl-carrier-protein) synthase II (RefSeq)
is similar to:
PaperBLAST

FADA6_MYCTU / I6XHJ3: Steroid 3-ketoacyl-CoA thiolase FadA6; Acetyl-CoA acetyltransferase FadA6; EC 2.3.1.16 from Mycobacterium tuberculosis
fadA6 / I6XHJ3: 3-oxo-acyl CoA thiolase (EC 2.3.1.16) from Mycobacterium tuberculosis

22% id,
60% cov

Msed_0656 / A4YEH9: acetyl-CoA C-acetyltransferase (EC 2.3.1.16) from Metallosphaera sedula

32% id,
23% cov

thl / P45359: acetoacetyl-CoA thiolase monomer (EC 2.3.1.16) from Clostridium acetobutylicum

27% id,
26% cov

More...

Sama_3391: 3-oxoacyl-(acyl carrier protein) synthase I (RefSeq)
is similar to:
PaperBLAST

ECHB_MOUSE / Q99JY0: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Mus musculus

27% id,
33% cov

ECHB_RAT / Q60587: Trifunctional enzyme subunit beta, mitochondrial; TP-beta; EC 2.3.1.155; EC 2.3.1.16 from Rattus norvegicus

30% id,
19% cov

Sama_1378: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

36% id,
23% cov

Sama_3135: enoyl-CoA hydratase (RefSeq)
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus

25% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3723305-3724141 (frame -2) on 248323
is similar to:
PaperBLAST

Q64428: long-chain-3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.211); acetyl-CoA C-acyltransferase (EC 2.3.1.16) from Rattus norvegicus
Also see hits to annotated proteins above

25% id,
32% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory