Searching in Shewanella amazonensis SB2B (SB2B)
Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).
These curated entries have 14 distinct sequences.
Running ublast with E ≤ 0.01
Found 4 relevant proteins in Shewanella amazonensis SB2B, or try another query
| Sama_0335: 2-isopropylmalate synthase (RefSeq) is similar to: | PaperBLAST |
D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus | 42% id, 94% cov |
AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii | 40% id, 86% cov |
NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii | 36% id, 88% cov |
| Sama_1358: pyruvate carboxyltransferase (RefSeq) is similar to: | PaperBLAST |
AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii | 24% id, 67% cov |
HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius | 25% id, 58% cov |
HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii | 25% id, 49% cov |
| Sama_1052: oxaloacetate decarboxylase (RefSeq) is similar to: | PaperBLAST |
A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp. | 22% id, 69% cov |
| Sama_1629: AsnC family transcriptional regulator (RefSeq) is similar to: | PaperBLAST |
HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii | 21% id, 30% cov |
HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius | 22% id, 26% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 403163-404833 (frame +2) on 248323 is similar to: | PaperBLAST |
D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus | 41% id, 98% cov |
AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii | 40% id, 87% cov |
A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp. | 34% id, 92% cov |
Lawrence Berkeley National Laboratory