Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 108 curated entries in PaperBLAST's database that match '2.4.2.2'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2193: queuine tRNA-ribosyltransferase (RefSeq)
is similar to:
PaperBLAST

TGT_ECOLI / P0A847: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Escherichia coli
Tgt: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
tgt / P0A847: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
P0A847: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Escherichia coli

83% id,
99% cov

Q54177: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Shigella flexneri

82% id,
99% cov

tgt / Q183P1: preQ1 tRNA-ribosyltransferase (EC 2.4.2.29) from Clostridioides difficile

56% id,
99% cov

More...

Sama_0412: uridine phosphorylase (RefSeq)
is similar to:
PaperBLAST

Udp / b3831: uridine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli
udp / P12758: uridine phosphorylase (EC 2.4.2.2) from Escherichia coli

79% id,
99% cov

TK1479 / Q5JJC1: uridine phosphorylase (EC 2.4.2.2) from Thermococcus kodakarensis

44% id,
83% cov

Q5XA29: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Streptococcus pyogenes

38% id,
93% cov

More...

Sama_0974: thymidine phosphorylase (RefSeq)
is similar to:
PaperBLAST

Ttg / b4382: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
deoA / P07650: thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli

67% id,
100% cov

PDP_BACSU / P39142: Pyrimidine-nucleoside phosphorylase; PYNP; Py-NPase; EC 2.4.2.2 from Bacillus subtilis
pdp / GB|CAB15976.2: pyrimidine-nucleoside phosphorylase; EC 2.4.2.2 from Bacillus subtilis

44% id,
97% cov

Q5SHF9: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

39% id,
96% cov

More...

Sama_2604: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli

55% id,
98% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

36% id,
94% cov

PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.1; EC 2.4.2.28 from Unknown prokaryotic

30% id,
94% cov

More...

Sama_3424: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.15; EC 2.4.2.4; EC 2.4.2.3 from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
ppnP / P0C037: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.2; EC 2.4.2.1) from Escherichia coli

41% id,
99% cov

Sama_0762: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

cobT / A0A0K1TPX5: nicotinate-nucleotide--5-methoxybenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Moorella thermoacetica

42% id,
94% cov

cobT / P29935: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Sinorhizobium sp.
P29935: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Pseudomonas denitrificans

42% id,
91% cov

COBT_SALTY / Q05603: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; NN:DBI PRT; N(1)-alpha-phosphoribosyltransferase; EC 2.4.2.21 from Salmonella typhimurium
cobT / Q05603: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Salmonella typhimurium
Q05603: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Salmonella enterica

39% id,
95% cov

More...

Sama_0771: hypoxanthine phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

HGXR_TRIFO / P51900: Hypoxanthine-guanine-xanthine phosphoribosyltransferase; HGPRT; HGXPRT; HGXPRTase; EC 2.4.2.22; EC 2.4.2.8 from Tritrichomonas foetus

35% id,
93% cov

HGXR_PLAFG / P20035: Hypoxanthine-guanine-xanthine phosphoribosyltransferase; HGPRT; HGXPRT; HGXPRTase; EC 2.4.2.22; EC 2.4.2.8 from Plasmodium falciparum

33% id,
78% cov

Sama_0976: purine nucleoside phosphorylase (RefSeq)
is similar to:
PaperBLAST

Udp / b3831: uridine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli
udp / P12758: uridine phosphorylase (EC 2.4.2.2) from Escherichia coli

31% id,
94% cov

TK1479 / Q5JJC1: uridine phosphorylase (EC 2.4.2.2) from Thermococcus kodakarensis

32% id,
82% cov

Sama_0855: adenosylhomocysteine nucleosidase (RefSeq)
is similar to:
PaperBLAST

Q7XA67: S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28); adenosylhomocysteine nucleosidase (EC 3.2.2.9) from Arabidopsis thaliana

28% id,
85% cov

Q9T0I8: S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28); adenosylhomocysteine nucleosidase (EC 3.2.2.9) from Arabidopsis thaliana

27% id,
64% cov

Sama_2131: anthranilate phosphoribosyltransferase (RefSeq)
is similar to:
PaperBLAST

TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens

26% id,
64% cov

Sama_2969: nitroreductase (RefSeq)
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii

31% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

954797-955384 (frame +2) on 248323
is similar to:
PaperBLAST

HGXR_TRIFO / P51900: Hypoxanthine-guanine-xanthine phosphoribosyltransferase; HGPRT; HGXPRT; HGXPRTase; EC 2.4.2.22; EC 2.4.2.8 from Tritrichomonas foetus
Also see hits to annotated proteins above

35% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory