Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 44 curated entries in PaperBLAST's database that match '2.6.1.19'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2636: 4-aminobutyrate aminotransferase (RefSeq)
is similar to:		 PaperBLAST

Sama_2636: gamma-aminobutyrate transaminase (EC 2.6.1.19) from Shewanella amazonensis

 100% id,
100% cov

gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens

 71% id,
99% cov

GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli
GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli
gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli

 68% id,
99% cov

More...

Sama_2643: putative aminotransferase (RefSeq)
is similar to:		 PaperBLAST

Sama_2643: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Shewanella amazonensis

 100% id,
100% cov

AO353_08585: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens

 66% id,
98% cov

PS417_27130: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas simiae

 66% id,
97% cov

More...

Sama_1628: bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
is similar to:		 PaperBLAST

slr1022 / P73133: bifunctional acetylornithine transaminase/4-aminobutyrate—2-oxoglutarate transaminase (EC 2.6.1.19; EC 2.6.1.11) from Synechocystis sp.
P73133: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 45% id,
93% cov

B1XNF8: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 43% id,
96% cov

gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens

 36% id,
99% cov

More...

Sama_3011: bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
is similar to:		 PaperBLAST

B1XNF8: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 43% id,
96% cov

slr1022 / P73133: bifunctional acetylornithine transaminase/4-aminobutyrate—2-oxoglutarate transaminase (EC 2.6.1.19; EC 2.6.1.11) from Synechocystis sp.
P73133: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 42% id,
93% cov

gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens

 35% id,
100% cov

More...

Sama_2649: beta alanine--pyruvate transaminase (RefSeq)
is similar to:		 PaperBLAST

AO356_13150: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens

 40% id,
94% cov

AO353_08585: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens

 39% id,
97% cov

Pf6N2E2_4512: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens

 40% id,
93% cov

More...

Sama_3606: aminotransferase, class III; 4-aminobutyrate aminotransferase (RefSeq)
is similar to:		 PaperBLAST

gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens

 31% id,
97% cov

gabT / Q0K2K2: 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator
Q0K2K2: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator

 31% id,
97% cov

A0A5B8KQ12: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Agrobacterium tumefaciens

 31% id,
96% cov

More...

Sama_1437: adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq)
is similar to:		 PaperBLAST

Sama_2643: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Shewanella amazonensis

 30% id,
97% cov

B1XNF8: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 30% id,
92% cov

Sama_2636: gamma-aminobutyrate transaminase (EC 2.6.1.19) from Shewanella amazonensis

 31% id,
89% cov

More...

Sama_0839: glutamate-1-semialdehyde aminotransferase (RefSeq)
is similar to:		 PaperBLAST

gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens

 33% id,
82% cov

GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli
GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli
gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli

 31% id,
86% cov

B1XNF8: acetylornithine transaminase (EC 2.6.1.11); 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Synechococcus sp.

 27% id,
98% cov

More...

Sama_1482: aminotransferase (RefSeq)
is similar to:		 PaperBLAST

PUUE_ECOLI / P50457: 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli
GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

 26% id,
95% cov

A5H0J6: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Lachancea kluyveri

 30% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory