Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 16 curated entries in PaperBLAST's database that match '2.6.1.39' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2636: 4-aminobutyrate aminotransferase (RefSeq)
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

41% id,
99% cov

Sama_1628: bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

35% id,
96% cov

Sama_3011: bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

34% id,
97% cov

Sama_1437: adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq)
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

30% id,
98% cov

Sama_2643: putative aminotransferase (RefSeq)
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

28% id,
99% cov

Sama_2649: beta alanine--pyruvate transaminase (RefSeq)
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

28% id,
93% cov

Sama_0839: glutamate-1-semialdehyde aminotransferase (RefSeq)
is similar to:
PaperBLAST

Q88FI7: 4-aminobutyrate aminotransferase (EC 2.6.1.39) from Pseudomonas putida
PP_4108: 2-aminoadipate transaminase (EC 2.6.1.39) from Pseudomonas putida

33% id,
79% cov

Sama_1697: aminotransferase AlaT (RefSeq)
is similar to:
PaperBLAST

AAT_RHIME / P58350: Aspartate aminotransferase; AAT; AspAT; Putative 2-aminoadipate transaminase; Transaminase A; EC 2.6.1.1; EC 2.6.1.39 from Rhizobium meliloti
SMc04386: 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) from Sinorhizobium meliloti

27% id,
90% cov

Sama_2016: GntR family transcriptional regulator (RefSeq)
is similar to:
PaperBLAST

LYSN_THET2 / Q72LL6: 2-aminoadipate transaminase; 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT; EC 2.6.1.39 from Thermus thermophilus
Q72LL6: 2-aminoadipate transaminase (EC 2.6.1.39) from Thermus thermophilus

27% id,
76% cov

lysN / Q5SL82: L-2-aminoadipate aminotransferase monomer (EC 2.6.1.39) from Thermus thermophilus

27% id,
76% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory