Curated BLAST for Genomes

 

Curated BLAST

Searching in Shewanella amazonensis SB2B (SB2B)

Found 12 curated entries in PaperBLAST's database that match '2.6.1.48' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Shewanella amazonensis SB2B, or try another query

Sama_2636: 4-aminobutyrate aminotransferase (RefSeq)
is similar to:
PaperBLAST

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

72% id,
100% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

71% id,
100% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

71% id,
100% cov

More...

Sama_1628: bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
is similar to:
PaperBLAST

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

35% id,
99% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

35% id,
94% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

35% id,
94% cov

More...

Sama_3011: bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (RefSeq)
is similar to:
PaperBLAST

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

38% id,
92% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

34% id,
100% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

35% id,
95% cov

More...

Sama_3606: aminotransferase, class III; 4-aminobutyrate aminotransferase (RefSeq)
is similar to:
PaperBLAST

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

31% id,
96% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

31% id,
96% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

31% id,
97% cov

More...

Sama_1437: adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq)
is similar to:
PaperBLAST

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

31% id,
94% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

30% id,
92% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

30% id,
91% cov

More...

Sama_2643: putative aminotransferase (RefSeq)
is similar to:
PaperBLAST

GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

30% id,
96% cov

GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli
GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli
gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli

30% id,
93% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

32% id,
86% cov

More...

Sama_2649: beta alanine--pyruvate transaminase (RefSeq)
is similar to:
PaperBLAST

GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

28% id,
98% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

29% id,
92% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

29% id,
91% cov

More...

Sama_0839: glutamate-1-semialdehyde aminotransferase (RefSeq)
is similar to:
PaperBLAST

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

33% id,
82% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

33% id,
82% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

32% id,
82% cov

More...

Sama_1482: aminotransferase (RefSeq)
is similar to:
PaperBLAST

GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

26% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory